Robert A Petit III: Nextflow v25 Broke Bactopia, So We Rewrote It Whole Genome Sequence Analysis | Bacterial Genome Analysis | Bioinformatics 101 for Beginners
bactopia/bactopia: A flexible pipeline for complete analysis - GitHub Bactopia is a flexible, Nextflow based, set of workflows for analysis of bacterial genomes. The default workflow is based on de-novo assembly. 20230324 Webinar: Go with the Workflow: NextflowDSL2 Basics
bactopia Introduction - Bioinformatics for Genomic Epidemiology March 2024
Introduction to Cholera Case Study - Hands On Lorem Ipsum is simply dummy text of the printing and typesetting industry. Recording of the second webinar of the 2022 SASSB Webinar Series 5 May 2022 Theme: Bacterial genomic diversity Invited nf-core/bytesize: variantcatalogue
Designing mechanisms into Bactopia to support its users and contribute back to the community. Robert Petit, Senior With our physical Webmaster Conference events on hold, we are excited to bring you a new series featuring conference-style StaPH-B Monthly Webinar - May 2020
An overview of Bactopia for the Bioinformatics Showcase at the 2025 APHBM conference. How GitHub and Ersilia open sourced endemic disease research in low-and-middle-income countries Roary pan genome tutorial | Bioinformatics tutorial on Pangenome analysis of bacterial genomes
Episode 7: Pathogens, Bactopia and awesome shirts Rob Lalonde of Seqera Labs interviews Robert Petit, a senior bioinformatics scientist at Wyoming Public Health Laboratory. In this Genomics-guided discovery of fungicidal bacteria - Matthew Biggs - MLCSB - ISMB 2020 Posters
Is It Worth Building a Custom WGS Analysis Pipeline When Bactopia Item - Optimizing ARG Detection in Lysimeter System: A
Unedited 1a audit Shelton PD 👍🏻 Bactopia: a Flexible Pipeline for Complete Analysis of Bacterial Genomes. mSystems. 5 (2020). Creators. Petit III, Robert A. ORCID icon · Read,
Comparative Genomics of Tick-Transmitted Bacteria k-mer analysis with python: estimating the genome size from raw data [01] Bacterial Analysis
This episode of Basic Bioinformatics is a high level review of a bioinformatics pipeline for microbial DNA variants. We will assume Introduction to DSL2 - Paolo Di Tommaso (Day 4_1)
This is a video of pictures done by my 7 year old using Windows Paint program. Music by Pink - So What. A talk by Jonathan Eisen given at a conference on "Genomes, Medicine and the Environment" in October 2007. The talk was
Presented: Thursday 4 August 2022 Presenter: Mr Yuanting Zheng Host: Prof. Robin Gasser VetSurgeon DVM PhD DVS Nextflow Summit 2022 - Robert Petit A brief 1 minute lightning talk giving an overview of my poster on Bactopia, a pipeline for the complete analysis of bacterial
#Infra4Dev Conference 2022 | DAY 2 | Lightning Talks & Featured Paper Presentations Using Bactopia for the complete analysis of bacterial genomes In this video I provide a short overview of my poster presented at the SFA2F conference. This poster gives a preview for what you
Genomics-guided discovery of fungicidal bacteria - Matthew Biggs - MLCSB - ISMB 2020 Posters. Epigenomics of Common Diseases: Methylation Risk Scores in childhood aeroallergen sensitization
In this webinar, Dan Browne and PacBio Bioinformatics Field Application Scientist, presents on microbial assembly as our latest This is an unedited video of a 1a audit on the Shelton Police Department in Shelton Washington. ABPHM Lightning Talk - Using Bactopia to process 67,000 Staphylococcus aureus genomes with AWS Batch
Lightning Talks presented by Dan Cuellar #AppiumConf2021 Bactopia Overview - ABPHM Bioinformatics Showcase We've invited Robert Petit and Tim Read from Emory University to present on Bactopia, "an extensive workflow for processing
A genomic encyclopedia of bacteria and archaea (GEBA) Bactopia is a flexible pipeline for complete analysis of bacterial genomes. The goal of Bactopia is to process your data with a broad set of tools. Robert A. Petit III is giving an introduction to bactopia, a nextflow pipeline that is not part of nf-core but is using some of the nf-core
Production : TCHANA Valdo #cinema #africa #humour #music #happy. Bactopia Lightning Talk - Wellcome AMR - Genomes, Big Data and Emerging Technologies conference Computational analysis pipelines are a key element of modern science but can be difficult to maintain or export to other systems,
Abstract Swine dysentery (SD) caused by Brachyspira hyodysenteriae results in economic losses in swine producing countries "Explore this detailed guide for microbiology and bioinformatics students, covering essential research methodologies for It is now relatively easy to obtain a high-quality draft genome sequence of a bacterium, but bioinformatic analysis requires organization and optimization
Nextflow v25 Broke Bactopia, So We Rewrote It Robert A Petit III - Senior Bioinformatics Scientist, Wyoming Public Health This is a very brief Lightning Talk for a poster I'll presenting at ABPHM 2021. I this poster titled "Using Bactopia to process 67000
Bactopia is a flexible pipeline for complete analysis of bacterial genomes. The goal of Bactopia is process your data with a broad set of tools. Day 9: morning session working on Bactopia coding with Peter part 2 Bactopia is an open source system that can scale from projects as small as one bacterial genome to ones including thousands of genomes.
Solenne Correard introduces the nextflow pipeline variantcatalogue. Though not an nf-core pipeline (yet), variantcatalogue is Macee Video
Bactopia v3 - enhancements for public health genomic surveillance. Robert Petit, Senior Bioinformatics Scientist at Wyoming My 2021 Waite Research Institute Showcase video entry talking about my PhD research. Videos were required to be aimed at a Basic Bioinformatics: Overview of a Microbial DNA Variants Pipeline
2025 Bactopia for genomic epidemiology investigations Is Microbiology the NEW Gold Standard for Lab-based Research Projects? Macee, Lexy, Phoebe, Modesta, Destiny and Kenzie singing Justin Bieber's "Baby". All the parents of these girls have given their
Nextflow Summit Boston 2023 - Robert Petit This is a brief 1 minute overview of Bactopia for the Bioinformatics Showcase at the 2023 APHBM conference. This tutorial shows you how to analyze whole genome sequence of a bacterial genome. A bioinformatics tutorial on Bacterial
JBrowse Genome Browser Video Tutorial Integrating Staphopia into your Staphylococcus aureus genomic investigations
Dan was selected to speak at Selenium Conference 2012 in London about an entirely different topic. As part of his presentation, A demo of how we can share pipelines using: • GitHub to host the code and the configuration • Docker (or Singularity, or even
This week, Maxime Garcia (@MaxUlysse) will present: How nf-core configs work. This talk will cover: * Making your own Nextflow [Nextflow DSL2] Running a remote pipeline using Docker WMConf Lightning Talks - Official trailer (new series)
SFA2F Poster - Bactopia v2: Highly scalable, portable and customizable bacterial genome analyses 08 Working with Nextflow DSL2 modules and Bactopia | Robert Petit
Video recorded during the virtual Bioinfoskills for Microbial Genomics workshop - 02 Feb 2022. Day 4 - session 1 Talk: Introduction to DSL2 - Paolo di Tommaso | Seqera Labs.
ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR221/005/SRR22175105/SRR22175105_1.fastq.gz Ragout - A reference-assisted assembly tool for bacterial genomes - Mikhail Kolmogorov - ISMB 2014
Hello everyone! Here is a short talk titled "Integrating Staphopia into Staphylococcus aureus genomic investigations". In this talk I DAY 2, MARCH 4 | SESSION VII 00:00 - Lightning Talks: Sustainable Growth Moderated by Maria Vagliasindi, Lead Economist, Informatic Methods & Strategies: Parasite Genomes & Genomic Dark Matter by Mr Yuanting
Bactopia 2.1.0 - CQLS Software Update List Bactopia Overview - ABPHM 2025 Bioinformatics Showcase Day 9: morning session working on Bactopia with Peter
On April 28th, 2022, I was invited to give a talk about Bactopia to the African Bioinformatics Network. In this talk, I provide a nf-core/bytesize: bactopia & using nf-core components in non-nf-core pipelines
The code is The written tutorial is Introduction to Nextflow DLS2 with de novo assembly tutorial [keynote]
This lightning talk introduces our poster on methylation risk scores in aeroallergen sensitization, which was presented on the Ragout - A reference-assisted assembly tool for bacterial genomes - Mikhail Kolmogorov - ISMB 2014. This study evaluates four genomic analysis pipelines—Bactopia, Nullarbor, TORMES, and Nf-core/mag—for detecting antibiotic resistance genes (
6 girls sing Justin Bieber's "Baby" Towards the Pangenome of banana Bactopia: Introduction
GitHub's Skill-Based Volunteering Project Team and Ersilia, an AI non-profit, built an Actions solution that sped up machine Nick Vereecke: Emergence of new multi-resistant bacteria strains revealed by high-quality WGS
Keywords ### #ImageGenerator #desktopapplication #easilygenerate #generatecomparative #comparativegenomic Bioinformatics Lunch & Learn: Better Assemblies of Bacterial Genomes with Microbial Analysis
Given that Bactopia is well-documented and actively maintained, would it still make sense to build my own pipeline from scratch? Or should I A step-by-step process of performing pangenome analysis using the tools Prokka and Roary. On bacteria genomes *Thank me
CAB-KUIAS Internationall Series 2022 "Banana genomics and its application:Breeding and world current disease" Friday, Bacterial genomic diversity: Prof. Luis-Miguel Rodriguez-R, Catherine Brink and Diego Castillo
Bactopia: a Flexible Pipeline for Complete Analysis of Bacterial BLAST Ring Image Generator (BRIG): simple prokaryote genome comparisons | RTCL.TV
Bactopia is a flexible pipeline for complete analysis of bacterial genomes. Information Last Updated. at 08:29. License. MIT. Total Downloads. APRÈS BACC: épisode 11 If Bacteria were visible naked eye.
How nf-core configs work (nf-core/bytesize #2) A cannabis pan-genome The JBrowse Genome Browser allows the user to view objects such as genes, variants, QTLs, and so forth in their genomic